Fixed org-roam to workin the container and added env variable

.spacemacs

@@ -31,8 +31,9 @@ values."
    ;; List of configuration layers to load.
    dotspacemacs-configuration-layers
    '(
+     ;; org
      org-roam
-     w3m
+     ;; w3m
      python
      yaml
      asciidoc
@@ -47,7 +48,6 @@ values."
      emacs-lisp
      git
      markdown
-     org
      (shell :variables
             shell-default-height 30
             shell-default-position 'bottom)
@@ -61,6 +61,8 @@ values."
    ;; configuration in `dotspacemacs/user-config'.
    dotspacemacs-additional-packages '(
                                       elpy
+                                      emacsql
+                                      emacsql-lite
                                      )
    ;; A list of packages that cannot be updated.
    dotspacemacs-frozen-packages '()
@@ -325,7 +327,7 @@ you should place your code here."
  ;; If you edit it by hand, you could mess it up, so be careful.
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
- '(org-roam-directory "/mnt/wavier/perso/roam-notes")
+ ;; '(org-roam-directory "/mnt/wavier/perso/roam-notes")
  '(package-selected-packages
    '(yapfify yaml-mode xterm-color unfill powerline smeargle shell-pop pytest pyenv-mode py-isort pip-requirements spinner orgit org-projectile org-category-capture org-present org-pomodoro alert log4e gntp org-mime org-download mwim multi-term magit-gitflow magit-popup live-py-mode hydra lv hy-mode dash-functional htmlize parent-mode helm-pydoc projectile helm-gitignore helm-company helm-c-yasnippet gnuplot gitignore-mode gitconfig-mode gitattributes-mode git-timemachine git-messenger git-link git-gutter-fringe+ git-gutter-fringe fringe-helper git-gutter+ git-gutter fuzzy flyspell-correct-helm flyspell-correct flycheck-pos-tip pos-tip flycheck pkg-info epl flx highlight evil-magit magit git-commit with-editor transient smartparens iedit anzu evil goto-chg undo-tree eshell-z eshell-prompt-extras esh-help elpy pyvenv diff-hl cython-mode company-statistics company-anaconda bind-map bind-key auto-yasnippet yasnippet auto-dictionary packed anaconda-mode pythonic f dash s adoc-mode markup-faces helm avy helm-core async ac-ispell auto-complete popup mmm-mode markdown-toc markdown-mode gh-md company org-roam-server evil-unimpaired sqlite sqlite3 emacsql-sqlite3 org-roam ws-butler winum which-key volatile-highlights vi-tilde-fringe uuidgen use-package toc-org spaceline restart-emacs request rainbow-delimiters popwin persp-mode pcre2el paradox org-plus-contrib org-bullets open-junk-file neotree move-text macrostep lorem-ipsum linum-relative link-hint indent-guide hungry-delete hl-todo highlight-parentheses highlight-numbers highlight-indentation helm-themes helm-swoop helm-projectile helm-mode-manager helm-make helm-flx helm-descbinds helm-ag google-translate golden-ratio flx-ido fill-column-indicator fancy-battery eyebrowse expand-region exec-path-from-shell evil-visualstar evil-visual-mark-mode evil-tutor evil-surround evil-search-highlight-persist evil-numbers evil-nerd-commenter evil-mc evil-matchit evil-lisp-state evil-indent-plus evil-iedit-state evil-exchange evil-escape evil-ediff evil-args evil-anzu eval-sexp-fu elisp-slime-nav dumb-jump diminish define-word column-enforce-mode clean-aindent-mode auto-highlight-symbol auto-compile aggressive-indent adaptive-wrap ace-window ace-link ace-jump-helm-line)))
 (custom-set-faces
@@ -334,3 +336,22 @@ you should place your code here."
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
  )
+(defun dotspacemacs/emacs-custom-settings ()
+  "Emacs custom settings.
+This is an auto-generated function, do not modify its content directly, use
+Emacs customize menu instead.
+This function is called at the very end of Spacemacs initialization."
+(custom-set-variables
+ ;; custom-set-variables was added by Custom.
+ ;; If you edit it by hand, you could mess it up, so be careful.
+ ;; Your init file should contain only one such instance.
+ ;; If there is more than one, they won't work right.
+ '(package-selected-packages
+   '(yapfify yaml-mode xterm-color unfill powerline smeargle shell-pop pytest pyenv-mode py-isort pip-requirements spinner orgit org-projectile org-category-capture org-present org-pomodoro alert log4e gntp org-mime org-download mwim multi-term magit-gitflow magit-popup live-py-mode hydra lv hy-mode dash-functional htmlize parent-mode helm-pydoc projectile helm-gitignore helm-company helm-c-yasnippet gnuplot gitignore-mode gitconfig-mode gitattributes-mode git-timemachine git-messenger git-link git-gutter-fringe+ git-gutter-fringe fringe-helper git-gutter+ git-gutter fuzzy flyspell-correct-helm flyspell-correct flycheck-pos-tip pos-tip flycheck pkg-info epl flx highlight evil-magit magit git-commit with-editor transient smartparens iedit anzu evil goto-chg undo-tree eshell-z eshell-prompt-extras esh-help elpy pyvenv diff-hl cython-mode company-statistics company-anaconda bind-map bind-key auto-yasnippet yasnippet auto-dictionary packed anaconda-mode pythonic f dash s adoc-mode markup-faces helm avy helm-core async ac-ispell auto-complete popup mmm-mode markdown-toc markdown-mode gh-md company org-roam-server evil-unimpaired sqlite sqlite3 emacsql-sqlite3 org-roam ws-butler winum which-key volatile-highlights vi-tilde-fringe uuidgen use-package toc-org spaceline restart-emacs request rainbow-delimiters popwin persp-mode pcre2el paradox org-plus-contrib org-bullets open-junk-file neotree move-text macrostep lorem-ipsum linum-relative link-hint indent-guide hungry-delete hl-todo highlight-parentheses highlight-numbers highlight-indentation helm-themes helm-swoop helm-projectile helm-mode-manager helm-make helm-flx helm-descbinds helm-ag google-translate golden-ratio flx-ido fill-column-indicator fancy-battery eyebrowse expand-region exec-path-from-shell evil-visualstar evil-visual-mark-mode evil-tutor evil-surround evil-search-highlight-persist evil-numbers evil-nerd-commenter evil-mc evil-matchit evil-lisp-state evil-indent-plus evil-iedit-state evil-exchange evil-escape evil-ediff evil-args evil-anzu eval-sexp-fu elisp-slime-nav dumb-jump diminish define-word column-enforce-mode clean-aindent-mode auto-highlight-symbol auto-compile aggressive-indent adaptive-wrap ace-window ace-link ace-jump-helm-line)))
+(custom-set-faces
+ ;; custom-set-faces was added by Custom.
+ ;; If you edit it by hand, you could mess it up, so be careful.
+ ;; Your init file should contain only one such instance.
+ ;; If there is more than one, they won't work right.
+ )
+)

private/org-roam/packages.el

@@ -31,18 +31,21 @@
 
 (defconst org-roam-packages
   '(
-    emacsql
-    emacsql-lite
     org-roam
     )
   )
 
 (defun org-roam/init-org-roam ()
   (use-package org-roam
+    :ensure t
+    :after org
     :hook
     (after-init . org-roam-mode)
+    :defer t
     :custom
-    (org-roam-directory "/mnt/host/perso/roam-notes/")
+    (org-roam-directory
+     (cond ((getenv "ROAM_NOTES_ROOT")) (t "~/perso/roam-notes"))
+     )
     :init
     (progn
       (spacemacs/declare-prefix "ar" "org-roam")